PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G10670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 271aa    MW: 28024.5 Da    PI: 8.1882
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G10670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.38.5e-41331331100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ae
  ORUFI03G10670.1  33 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAE 126
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l +l+++
  ORUFI03G10670.1 127 LTYLQAH 133
                      **99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.34832134IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-4033131IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSSGGGASSA LGGGGSGGGG GGPSGGGGGG GGPCGACKFL RRKCVSGCIF APYFDSEQGA  60
AHFAAVHKVF GASNVSKLLL QIPAHKRPDA VVTICYEAQA RLRDPVYGCV AHIFALQQQV  120
VNLQAELTYL QAHLATLELP SPPPLMPAPP QMPMPAPFSI SDLPSSTSVP TTVDLSALFD  180
PPPQPQWASP LQQQQHHHHQ HHHHQQQQHQ LRQPSYATLA RAPSGMTAAA ESSGGGGGGG  240
GGDLQALARE LLDRHRSAVK LEQPPPPHSR S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186720.0AC118672.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0078P24, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629413.11e-120PREDICTED: LOB domain-containing protein 30
SwissprotO813232e-71LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0E0NSE50.0A0A0E0NSE5_ORYRU; Uncharacterized protein
STRINGBGIOSGA011118-PA1e-124(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.14e-68LBD family protein